PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29154.m000218
Common NameLOC8261609, RCOM_0390960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 159aa    MW: 17324.2 Da    PI: 10.1536
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29154.m000218genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000873658123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C+++Fs+   L  H  +H
  29154.m000218 36 FACKTCNRRFSSFQALGGHRASH 58
                   78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.9E-934103No hitNo description
PROSITE profilePS5015710.1383663IPR007087Zinc finger, C2H2
SMARTSM003550.313658IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-113660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139127.6E-1080105IPR007087Zinc finger, C2H2
SMARTSM003550.581103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.95181108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKRDREEAVI DMANCLMLLS KVGQTELEDS KPGRLFACKT CNRRFSSFQA LGGHRASHKK  60
PKLIGDDLLK LPSSPPKPKT HECSICGLEF AIGQALGGHM RRHRGNTGGG GGDGVVTRAL  120
LPVPVMKKSN SSKRVLCLDL NLTPVENYDL TLQLGKVLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533110.11e-114PREDICTED: zinc finger protein ZAT12
SwissprotQ424101e-50ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLB9T4E11e-114B9T4E1_RICCO; Nucleic acid binding protein, putative
STRINGPOPTR_0009s03280.15e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-37C2H2 family protein